Monday, January 11, 2010

Sunrise Over The Vet School Parking Lot


Here's a poem I jotted down this afternoon while running errands, inspired by the recent sunshine and brilliant sunrise. It's a work in progress.

Color Creeps Back In

Depression is:
a silent slow motion black and white film
faded newsprint wallpaper backdrop
your body swathed in cast padding
numb, a lidocaine block of the heart

Feeling alive is:
arterial blood splattered across
the dawn sky, bright red
the glowing orange of hot coals
brilliant fuschia flowers
heart open, aching with beauty

Color creeps back in
gradually
shades of grey
begin to have hints of pastel pinks
and purples
the heart tingles
waking up from being asleep


*
I'm fully expecting someone, probably HP, to point out that emergency medicine has completely ruined me and turned me into an adrenaline junkie (the other hallmark of emergency doctors besides not liking skin). After working in emergency care, everything else seems slow and less exciting. How is one supposed to feel alive unless arterial blood is spraying the walls (or dawn sky...)?

If I could I would space out the words in the line 'a silent slow motion...' but Blogger will not cooperate and no matter how I endeavor to designate spaces it comes out as above. Oh well. I think exaggerating the spaces between words would reinforce the feeling of slow motion that is so characteristic of depression by making the reader slow down while reading the line.

Sunday, January 10, 2010

What A Difference The Sun Makes: The Views From My Windows On A Sunny Sunday

I woke up and the first thing I saw was the view above. What a treat! It makes one want to practically leap out of bed.


And then the sun started to set, at fourish:





Above: My roommate's dogs in the downstairs window.

This morning there was real sunshine that lasted all morning long, not just brief sunshine showers like the day before. What a difference! Everything sparkled and glowed. I've learned to appreciate the subtle beauty of the many shades of grey that Ithaca has to offer, but there's still nothing quite like blue skies and sparkling icicles first thing in the morning.

You might have observed that it isn't snowing in these pictures. I've noticed that it tends to be sunny right after a big snow storm. All the more reason to love snow in my opinion! It's beautiful, and it portends sunshine.

I'm behind in my studying, and studied out! Right now I'm going over a lecture we had on histoanatomy and function of skin as part of our week on inflammation (I don't really think it fit well anywhere in our curriculum-- one of the drawbacks of an integrated curriculum is it has to go somewhere since we have no separate histology course-- so since the skin has all kinds of inflammatory conditions associated with it they stuck it there but I somehow overlooked it. On the plus side, Dr. Scott was a fabulous lecturer who also clearly knew what he was talking about-- he listed in his references three books he authored-- Muller and Kirk's Small Animal Dermatology VI, Large Animal Dermatology and Equine Dermatology. I've gotten spoiled and have become accustomed to having the same people who wrote the books on the subject being my lecturers at Cornell).

There's just so much minutia that my brain can remember. For example, hair follicles come in two flavors, simple and compound. Simple hair follicles have one hair per pore/infundibulum and compound have multiple hairs per pore. Cats and dogs have compound hair follicles. Horses and cows have simple hair follicles. Sounds easy enough to remember if my brain weren't pretty chock full to start.

It just goes on and on... There are also two kinds of sweat glands. Epitrichial/apocrine sweat glands are found throughout haired skin and secrete epitricheal sweat, which has moisturizing, antimicrobial, excretory, pheromonal and thermoregulatory functions. The thermoregulatory function is most significant in horses and cattle. Anihidrosis (lack of sweat) is a major problem in horses. (The opposite, excessive sweating, is called hyperhidrosis as you might have guessed). According to wikipedia, horses are the only non-primates that have armpits that sweat like humans (now there's a good cocktail party pleaser).

The other kind of sweat glands are atrichial/eccrine sweat glands and they are only on the footpads of carnivores (including dogs, which are usually classified as omnivores).

People do not follow these rules. Although we have the highest density of epitrichial sweat glands on our hands and feet, they are also distributed all over the rest of our bodies (which is one big reason that we don't pant to cool down like dogs).

Back to the grindstone...

When I worked in emergency, one of my favorite doctors stated on her profile for the hospital's website that she chose emergency because she "doesn't do skin." I admit to having similar feelings to hers-- I don't enjoy dealing with skin problems. That said, here's a whole list of inflammatory skin conditions I should know at least a modicum about before my final on Thursday:

Pemphigus Foliaceus (one of three kinds of pemphigus): autoimmune disease-- antibodies attack the desmosome, resulting in keratinocyte cells becoming separated from each other (=acantholysis) and the epidermis falling apart

Vitiligo: antibodies target the melanocytes resulting in a loss of people; in people the antibodies are directed against tyrosinase but the target molecule is unknown in dogs

Bullous Pemphigoid -- antibodies target collagen XVII> basement membrane loses part of its adhering function, epithelium becomes necotic and dies, and in the words of Dr. Scott, 'the animal turns into a walking ulcer'

Epidermolysis Bullosa (there are several forms of this disease)--laminin genetically absent> poor epidermal/dermal adherence from birth> ulcers form at pressure points and in the oral cavity

Sebaceous Adenitis: sebaceous glands consumed by inflammation> no sebum (oily secretion) is produced> abnormal keratinization process occurs> skin becomes a scaly, waxy mess

Sterile Panniculitis: inflammatory condition of the subcutis (fat containing layer, most deep layer of the skin)

Miscellaneous--

Langerhans cells are dendritic cells found in the spinous layer of the epidermis-- they are the outpost of the cutaneous immune system and function as the critical antigen presenting cells in the epidermis

And the Word Of The Day is Striae (I swear, at least half of vet school early on is acquiring a whole new language-- medical vocabulary):
Striae are colloquially referred to as stretch marks and are areas of papery thin skin where the elastin has ruptured and the skin has pulled apart. Histologically there are no elastin fibers in that area. Besides pregnancy and weight gain, too many glucocorticoids can lead to the formation of striae because elastin fibers become abnormal due to the hormonal imbalance.

Saturday, January 9, 2010

The Views From My Windows Today

This is the window across from the foot of my bed, which is what I see first thing if I sit up in bed. Quite a view this morning, don't you think? I always hop out of bed and check on my car, below. Every morning this week I have thought, 'Really? I have to brush it off again?' I'm just not used to it snowing around the clock.


I also like to assess the driveway, and then peek at the backyard and neighbor's house. I was surprised to see the snow coming down so hard for the entire morning!



The bird feeder always provides lots of entertainment for the cats and I. This last view (below) is the window on the stair's landing just before entering my half of the duplex. It was sparkling with sunlight in the early afternoon-- yes, we got a brief shower of sunshine!

Friday, January 8, 2010

Driving In The Snow: Do Not Try This At Home (Or More Specifically, Do Not Try This On Burns Road In Ithaca)

This morning was quite an adventure. It was snowing heavily when I left for school at the crack of dawn. In my naivete, I decided to take the backroads because I was in a rush to get to school and the backroads are a short cut that shaves over ten minutes off my trip. In retrospect, this was a stupid, although everything worked out OK in the end.

Above is a picture of Burns road this morning-- totally deserted (for good reason). I got stuck on the iced-over bridge at the bottom of the photo and had a moment of brief panic, and then remembered that rather than spin my wheels I should try to reverse and rock the car. Thankfully reverse worked just fine and after reversing partway up the hill I went back over the bridge at a slightly faster speed and did not get stuck.

Finally, after traversing one more difficult spot (the steep hill when turning off route 79 onto Pine Tree road), I arrived at the vet school. There's my little car in the not ploughed parking lot of the vet school (at least not recently ploughed). As another student pointed out, the vet school has the earliest classes yet its parking lot is ploughed last. Go figure.

(I'm not quite sure why these two pictures came out so incredibly blue but it was still getting light when I got to school so it may have had something to do with the night-like sky).

And here's the view of Burns road on the return trip home. Much better!


Thanks all for the many comments on my last post. I was surprised to see so many people read something so lengthy! It really made my day.

I got two more clinically relevant lectures today. I was especially intrigued about the part on imaging lung metastases. Met checks, as they are called colloquially, always mystified me as a technician. I understood what the doctors were looking for and even the rational behind how we shot them-- the up side is magnified because of increased distance from the film which is useful if you are looking for something very small (also the up side is more inflated on inspiration). You take two laterals in addition to a ventrodorsal or dorsoventral view so that you get good views of both right and left lungs. Rather it was the interpretation part that seemed so mysterious-- sometimes I'd think I'd see masses and the doctors would declare the films clean with no metastases. Other times I'd be sure there were no masses and the doctors would see metastatic lesions.

Well, I finally have a bit of a better idea about why I didn't see the same things the doctors did on met checks, besides my inferior experience. For one thing, when viewed end-on a blood vessel can look just like a soft tissue nodule. Blood vessels tend to enter and exit at the base of the heart (right and left atrium) so the radiologist advised not looking there to start but instead examining the periphery of the lungs.

Another thing I learned about is ossifying pulmonary metaplasia, the formation of tiny bits of bone in the lungs. This is a normal degenerative change in older dogs' lungs (kind of like spondylosis and some other normal degenerative changes that occur elsewhere in older dogs I guess) and surprisingly does not cause clinical problems. It shows up as tiny little radioopaque dots, just like metastases, but their density is bone. How can you tell? For a mass that is less than 5 mm in size to be visible it has to have a mineral density otherwise you wouldn't see it as a white dot-- soft tissue just isn't visible at that tiny a size. Ossifying pulmonary metaplasia, as its name suggests, is not generally cancer-- so if you see mineral densities in the bone you can pretty safely assume that it is not metastases (the radiologist said that in the ten years he'd been at Cornell he'd only seen one osteosarcoma produce bone metastases in the lung).

That's as much truly clinical information as I'm going to get for the moment (that and my two lectures on cancer therapy/treatments). Unfortunately I don't get to the bulk of the clinical course work until Block 5, which is one year away (I'll be starting more or less at this time next year). It's sad to hear that I will forget so much of this. I'm enjoying it but I know that I will need to make room for the more clinically relevant material and so some penguins may fall off the iceburg (that's the analogy everyone here uses for forgetting what you just learned to make room for more new information). I do know at least one veterinarian who still remembers most of his basic science, the very cool Dr. Cool, now chief-of-staff at the emergency clinic in San Jose. His memory is like a steel trap, he lets nothing go (when I was back on break I'd just finished learning about apoptosis and he knew just as much about the genes and proteins involved-- Bax, Bcl2, caspase3 etc even though it had been almost ten years since he'd last seen that material!) But I guess even if I aspire to retaining information to that level of detail I may have to be more realistic and settle for less...

Thursday, January 7, 2010

Inundated With Introduction To Cancer And Lots Of Terminology

This week of my course is devoted entirely to cancer. The previous week was devoted entirely to inflammation. Combined, these two weeks make up the translation portion of our cell biology and genetics course, Block 2. Translation is a big buzz word, especially here at Cornell where the dean of the veterinary school is a researcher (_not_ a clinician at all mind you!) keen on translational research (which is essentially applied research-- or applying research to come up with better treatments for clinical problems). My experience as a patient at UCSF had already convinced me of the power of 'bench-t0-bedside' medicine long before I arrived at Cornell. My doctors there implemented the latest research in treating me, and were not only skilled surgeons and diagnosticians, but good researchers, or at the very least well educated on the most recent breakthroughs in their field.

I've had a few epiphanies during this week, I am beginning to understand the basics of cancer. For one thing, cancer comes about because of mutations in stem cells or other progenitor-type cells capable of proliferation. I never really understood this before. Non-stem cells/non-progenitor cells do not have the limitless replicative potential necessary for cancerous growth, which is one of six hallmarks of cancer (the other five are-- sustained angiogenesis, evading apoptosis/programmed cell death, self-sufficiency in growth signals, insensitivity to anti-growth signals, tissue invasion and metastasis).

Furthermore, the mutations that occur are usually in growth regulatory genes, typically oncogenes or tumor repressor genes. My professor, Dr. Levine, defines an oncogene as 'an altered gene whose product can act to help make a cell cancerous. It is generally a positive regulator of cell proliferation and is dominant... Mutations that activate proto-oncogenes are dominant, gain-of-function mutations, in which the oncoprotein is no longer tightly regulated.' The mutation does not have to be in the coding region of the gene itself, simple over-expression of a normal pro-proliferation cellular gene can turn it into an oncogene!

Chronic proliferation is a risk factor for cancer because every time a stem cell divides it is at risk for acquiring mutations that predispose it to cancer. I say mutations-- plural-- because in order to become cancerous, a cell must acquire multiple mutations since there are multiple characteristics/strategies/traits that are necessary for malignant cell growth and one mutation will not meet all the criterion needed to produce a cancer cell (see above for the six hallmarks of cancer). The need for multiple mutations helps explain why there is often a long latency period between exposure to a carcinogen and the development of cancer. It also is one reason that the risk for cancer is increased in older individuals-- they have had more time to accumulate mutations.

Here are some things that now make more sense to me-- you are more at risk for developing cancer under a scar than in unblemished skin (why is that? in order to heal and form a scar, the stem cells in that area were forced to divide, predisposing them to developing malignant mutations). The slide in my notes that says, 'The prevalence of growth disturbances depends on capacity of cells to reproduce' makes sense for the same reason. Most cancers originate from continuously replicating cells such as epidermis, GI tract epithelium and immune system cells. Some cancers come from stable cells that do not typically replicate but possess the ability to regenerate, i.e. liver/hepatocytes. Cells that have very little regenerative cancer like cardiac myocytes and neurons rarely become cancerous because they don't have stem cells that divide frequently (or at all in some cases).

My understanding of the importance of the role of proliferation in cancer also allowed me to understand aspects of my lecture on viral oncogenesis. Bovine leukemia virus is non-transducing long latency retrovirus that causes lymphocytosis (an increased number of lymphocytes) in about a third of cows one year after infection (technically this is leukemia but cows are hardy animals and don't show any clinical signs of disease unlike many other species). 5% develop bovine lymphosarcoma after 8 years. The tumors do not show viral expression and there is no viral oncogene activated by integration of bovine leukemia virus. The cancer stems from accumulated mutations due to the increased rate of replication of the lymphocytes.

Right now I'm studying pathology, how one identifies a malignant neoplasm. It turns out that it is not that easy! The three major differentials for a swelling/tumor are neoplasia (benign or malignant), inflammation and hyperplasia. Hyperplasia is defined in my notes as an increase in size due to an increase in the number of cells. It can be a protective response that regresses completely or it can go on to become cancer. As if that isn't complicated enough, there is no _one_ criterion for distinguishing benign neoplasias from malignant neoplasias. Malignant neoplasias are, according to my pathology notes, typically infiltrative, destructive, anaplastic (i.e. poorly differentiated), mitotically active, rapidly growing sometimes with necrosis, may have a desmoplastic response (lots of immature fibrous connective tissue) and the only dead ringer (no pun intended) is metastasis. The characteristics of a malignant cells' morphology are cellular pleomorphism-- anisocytosis, anisokaryosis, increased number of nucleoli and loss of nuclear polarity. Beyond identifying a tumor as cancerous, one is also expected to differentiate it based on the type of tissue it is derived from (as well as the actual structure or organ). Epithelial-derived tumors have polygonal cells and are called carcinomas (or adenocarcinoma if they are derived from glandular epithelial tissue). Mesenchymal-derived tumors are spindle shaped or round cells, may form rafts/streams and are called sarcomas.

And then there are all the details that make veterinary medicine so very fun and challenging. For example-- the area of a lymph node that is first colonized by metastatic cancer cells is the subscapular sinus, except in pigs and dolphins. (Right, got that!)

I have yet to study several lectures I've had recently-- 1. on cancer and immunology (trying to use the immune system to combat cancer-- mostly how to activate cytotoxic T cells with pathogen molecular associated pattern molecules but also a bit on DNA vaccines), 2. a very dense lecture on angiogenesis, invasiveness and metastasis that went into specific homing/anchorage factors such as the chemokine receptor CXCR4 which is involved in bone metastases (and is only one of several molecules that make up the bone-metastatic signature), 3. tumor suppressor genes, 4. oncogenes, 5. understanding cancer risk and management which includes risk factors for animal cancers (number of estrus cycles before spay and breast cancer in dogs, age at spay and breast cancer in cats, uv exposure, lack of pigmentation (white fur color) and squamous cell carcinoma of the skin in dogs and cats, herbicide and lymphoma in dogs, second hand smoke and lymphoma in cats-- this is interesting, they think the correlation is meaningful because cats groom so they ingest the particulate matter of second hand smoke and expose their GI tract to those carcinogenic molecules).

And that's not counting the lectures I have yet to get tomorrow on cancer imaging and cancer therapy.

If I had more time I'd write about Philadelphia chromosome for my mom (maybe another night, or perhaps it will be a dinner discussion next week). Cancer is fascinating and fun as long as you aren't the one who has it. Or your pet. It's the leading cause of death overall in dogs-- regardless of age 1 in 4 dogs dies of cancer.

As for the vocabulary-- I ran out of time. But try this-- telangiectasias means veins appearing on the eyes and skin (Ataxia Telangiectasia is a human disease that is linked to high rates of cancer). And pathology is always good for a few terms-- agenesis, aplasia, metaplasia, dysplasia, anaplasia (and I'm purposefully leaving out all the obvious -plasias like hyperplasia and hypoplasia). My favorite for the night-- papillary, used to describe patterns formed by tumor cells, means pertaining to or resembling a nipple or forming a rounded mass.

Note-- if you made it all the way to the end of this post kudos to you. Sorry it is so incredibly long, just didn't have time to condense it to something less wordy.

Monday, January 4, 2010

The Silent Killer In Our Midst And Post-Mortem (i.e. Midterm Exam) Results Are Back

I'm referencing an immune response, which isn't always pathological or part of a disease process. Yes, folks, the silent killer in our midst is... inflammation-- dum da dum! In Chapter 2 of the eighth edition of Robbins and Cotran's _Pathologic Basis Of Disease_ they state:
Inflammation may contribute to a variety of diseases that are not thought to be primarily due to abnormal host responses. For instance, chronic inflammation may play a role in atherosclerosis, type 2 diabetes, degenerative disorders like Alzheimer's disease, and cancer. In recognition of the wide-ranging harmful consequences of inflammation, the lay press has rather melodramatically referred to it as "the silent killer."
I remember reading a very interesting Scientific American article called "Heart Health In The Inflammation Age" about the role of inflammation in heart disease (and how inflammation stemming from dental disease may even be a risk factor for myocardial infarction).

More than that didn't make much sense to me until today, when we started our section on cancer. Dr. Levine explains the link between chronic inflammation and cancer in my 'Cancer Principles' handout:
Proliferating cells are more susceptible to acquiring mutations that contribute to tumor progression. Any factor that promotes chronic proliferation will increase the likelihood that an individual will develop cancer. Examples include: estrogen, which stimulates the proliferation of mammary and ovarian tissue; toxic chemicals including ethanol, which kills cells thereby promoting the proliferation of stem cells and hepatitis C virus, which promotes chronic inflammation of the liver, thereby stimulating hepatocyte proliferation. These factors act as indirect carcinogens because they don't directly mutagenize DNA. Chronic inflammation is especially dangerous because in addition to growth factors (promoters) secreted by neutrophils and macrophages, these cells also produce large amounts of reactive oxygen species which can act as initiators and mutagenize DNA.

What reactive oxygen species is he speaking of? I can flip to Dr. Clark's lecture (or Robbins and Cotran) and see that neutrophils produce superoxide, which is turned into hydrogen peroxide, which undergoes a further reaction to become hyperchlorous acid, i.e. bleach via myeloperoxidase. Macrophages form hydroxyl radicals rather than bleach (since they lack myeloperoxidase) and these react with reactive nitrogen intermediates to form the powerful peroxynitrite intermediate. (Cool aside: myeloperoxidase has a heme group which when combined with its bromine cofactor gives neutrophil rich secretions the greenish hue that you may be familiar with in substances such as pus or mucus).

What can you do about all this to prevent yourself from being struck down by the silent killer in our midst? Besides brushing your teeth and not sharing blood or bodily fluids (which will prevent you from contracting hepatitis C and a whole lot of other nasty viruses)? Robbins and Cotran illuminate:
Another approach to manipulating inflammatory responses has been to modify the intake and content of dietary lipids by increasing the consumption of fish oil. The proposed explanation for the effectiveness of this approach is that the polyunsaturated fatty acids in fish oil serve as poor substrates for conversion to active metabolites by both the cyclooxygenase and lipoxygenase pathways but are excellent substrates for the production of anti-inflammatory lipid products called resolvins and protectins.
Hence the big deal over omega-3 and -6 supplements, eating fish being good for your heart, and the many cereals and even peanut butter products that have flaxseed in them (I don't know if flaxseed is just as good as fish oil-- it is high in omega-3 but I'm not sure how bioavailable it is).

So brush your teeth, pratice safe sex, eat fish or take supplements with fish oil and you may evade the silent killer.

But lest you forget the original function of inflammation, I leave you with this pearl of wisdom from Dr. Buckle's lecture notes: As a clinican or pathologist remember, inflammation is the morphological manifestation of the immune response.

Now, back to the post-mortem. I'm thrilled with my midterm results. I'm very motivated to study hard for the final in hopes of getting a truly good grade. I guess my seasonal affective disorder can't keep me from succeeding academically. Phew.

Sunday, January 3, 2010

The Gendering Of Animals In Children's Clothing: Feminine Cats and Masculine Dogs

On my way back to Ithaca I stopped over in New York city to see my one year old niece, Talia (above). She's wearing a sweater that I picked up for her in San Jose. It has a stylized cat on it (in case you can't tell from the picture) and says 'Meow' (all you can see is the 'M').

I've noticed an interesting trend in infant clothing-- boys' clothing features lots of dogs and girls' clothing features far fewer animals, only an occasional cat. I'm fascinated that as a society we not only go to great lengths to identify infants' gender from day one (and if a baby is somehow dressed in an ambiguous, gender-neutral outfit then people inevitably inquire as to its sex) but also have denoted certain animals as masculine or feminine.

I wonder how dogs got to be masculine and cats got to be feminine? Women are sometimes derogatorily referrred to as catty. Could that have something to do with it?
Some rap singers refer to themselves as big dogs in their songs. (Akon has a song titled 'Big Dog' and Cordazar Calvin Broadus goes by the name 'Snoop Dogg'). Some little boys' clothing even says 'Big Dog' on it, although I doubt they are specifically referencing any rap songs.

I think it's fascinating that even in a language where objects/nouns are not gendered, we manage to assign a gender to animals.

That said, I did manage to find one top for Ian featuring a jaguar (that's a _big_ cat, not a big dog) and an older girls' top with a Scottish terrier (albeit wearing a jeweled collar). You know me, I like to be subversive!